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repair .so file be hided

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This commit is contained in:
ben0i0d 2024-10-16 16:31:16 +08:00
parent faf8c2f67a
commit 6727f1e209
10 changed files with 1332 additions and 993 deletions
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14
.gitea/workflows/Flow.yaml
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@ -148,6 +148,18 @@ jobs:
context: Program/cpp
tags: eoelab.org:1027/${{ gitea.repository }}:cpp
HASKELL:
runs-on: runner
needs: Base
steps:
- name: checkout code
uses: https://eoelab.org:1027/actions/checkout@v4
- name: haskell build
uses: https://eoelab.org:1027/actions/build-push-action@v6
with:
context: Program/haskell
tags: eoelab.org:1027/${{ gitea.repository }}:haskell
JAVA:
runs-on: runner
needs: Base
@ -314,7 +326,7 @@ jobs:
Push:
runs-on: runner
needs: [MATLAB_MCM, MAPLE, MMA] #
needs: [HASKELL] # MATLAB_MCM, MAPLE, MMA
steps:
- name: login gitea_registry
uses: https://eoelab.org:1027/actions/login-action@v3

60
Program/haskell/Dockerfile
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@ -1,69 +1,19 @@
FROM eoelab.org:1027/ben0i0d/jupyter:py-c
# Extra arguments to `stack build`. Used to build --fast, see Makefile.
ARG STACK_ARGS=
ARG STACK_BINDIST="stack-2.11.1-linux-x86_64"
USER root
ENV PATH="/opt/bin:/opt/ghc/bin:${PATH}" \
STACK_ROOT=/opt/stack
ENV STACK_ROOT=/opt/stack
# Stack global non-project-specific config stack.config.yaml
# Stack global project stack.yaml
# Stack switch to mirrored source
COPY stack.config.yaml /etc/stack/config.yaml
COPY global-hints.yaml /etc/stack/global-hints-cache.yaml
COPY stack-2.11.1-linux-x86_64.tar.gz /tmp/stack-2.11.1-linux-x86_64.tar.gz
COPY global-project.stack.yaml $STACK_ROOT/global-project/stack.yaml
#COPY global-hints.yaml /etc/stack/global-hints-cache.yaml
RUN fix-permissions $STACK_ROOT && fix-permissions /etc/stack/ && \
# Install system dependencies
apt-get update && apt-get install -yq --no-install-recommends python3-pip libtinfo-dev libzmq3-dev libcairo2-dev libpango1.0-dev \
libmagic-dev libblas-dev liblapack-dev libffi-dev libgmp-dev gnupg netbase graphviz gnuplot-nox \
g++ gcc libc6-dev libffi-dev libgmp-dev make xz-utils zlib1g-dev less && \
RUN apt-get update && apt-get install --yes haskell-stack git g++ && \
apt-get clean && rm -rf /var/lib/apt/lists/* && \
# Stack Linux (generic) Manual download
cd /tmp && tar zxf ${STACK_BINDIST}.tar.gz && cp ${STACK_BINDIST}/stack /usr/bin/stack && \
rm -rf ${STACK_BINDIST}.tar.gz ${STACK_BINDIST} && \
chown --recursive $NB_UID:users $STACK_ROOT/global-project && \
fix-permissions $STACK_ROOT/global-project && \
# Clone IHaskell and install ghc from the IHaskell resolver
cd /opt && \
curl -L "https://eoelab.org:1031/mirrored-sources/IHaskell/-/archive/master/IHaskell-master.tar.gz" | tar xzf - && mv *IHaskell* IHaskell && \
curl -L "https://eoelab.org:1031/mirrored-sources/hvega/-/archive/main/hvega-main.tar.gz" | tar xzf - && mv *hvega* hvega && \
fix-permissions /opt/IHaskell && \
fix-permissions $STACK_ROOT && \
fix-permissions /opt/hvega && \
mkdir -p $HOME/.cabal && \
echo "repository mirrors.ustc.edu.cn\n url: https://mirrors.ustc.edu.cn/hackage/\n secure: True" > $HOME/.cabal/config && \
stack setup && \
fix-permissions $STACK_ROOT && \
rm /opt/stack/programs/x86_64-linux/ghc*.tar.xz && \
mkdir -p /opt/stack && chown $NB_UID:$NB_GID /opt/stack
# Build IHaskell
# Note that we are NOT in the /opt/IHaskell directory here, we are installing ihaskell via the paths given in /opt/stack/global-project/stack.yaml
stack build $STACK_ARGS ihaskell && \
fix-permissions /opt/IHaskell && \
fix-permissions $STACK_ROOT && \
# Install IHaskell.Display libraries
stack build $STACK_ARGS ihaskell-charts && \
stack build $STACK_ARGS ihaskell-widgets && \
stack build $STACK_ARGS hvega && \
stack build $STACK_ARGS ihaskell-hvega && \
fix-permissions $STACK_ROOT && \
# Fix for https://github.com/IHaskell/ihaskell-notebook/issues/14#issuecomment-636334824
fix-permissions /opt/IHaskell && \
fix-permissions /opt/hvega && \
# Install system-level ghc using the ghc which was installed by stack.using the IHaskell resolver.
mkdir -p /opt/ghc && ln -s `stack path --compiler-bin` /opt/ghc/bin && \
fix-permissions /opt/ghc && \
fix-permissions "${CONDA_DIR}" && \
fix-permissions "/home/${NB_USER}"
# Switch back to jovyan user
USER $NB_UID
RUN stack exec ihaskell -- install --stack --prefix=/opt/conda/

2032
Program/haskell/global-hints.yaml
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49
Program/haskell/global-project.stack.yaml
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@ -1,49 +0,0 @@
# Copyright (c) James Brock.
# Distributed under the terms of the Modified MIT License.
resolver: nightly-2023-05-17
# GHC 9.4.5
# Stack global project /opt/stack/global-project/stack.yaml in the Docker image.
# https://docs.haskellstack.org/en/stable/yaml_configuration/#yaml-configuration
# All the IHaskell packages are listed as extra-deps rather than packages,
# because we never want to build anything automatically, we always want to
# select exactly what we build for the IHaskell notebook environment.
# For example, `stack ghci` tries to load every package listed in `packages`,
# and we don't want that behavior. Several of these packages are unbuildable
# at the time of this writing. See the Dockerfile for the list of packages
# which are pre-built into the Docker image.
#
# To make an notebook project with custom `stack.yaml`, copy this `stack.yaml`
# file into the project directory that has the `.ipynb` notebook file and
# then make changes to the copied `stack.yaml`.
packages: []
extra-deps:
- /opt/IHaskell
- /opt/IHaskell/ipython-kernel
- /opt/IHaskell/ghc-parser
- /opt/IHaskell/ihaskell-display/ihaskell-aeson
- /opt/IHaskell/ihaskell-display/ihaskell-blaze
- /opt/IHaskell/ihaskell-display/ihaskell-charts
- /opt/IHaskell/ihaskell-display/ihaskell-diagrams
- /opt/IHaskell/ihaskell-display/ihaskell-gnuplot
- /opt/IHaskell/ihaskell-display/ihaskell-graphviz
- /opt/IHaskell/ihaskell-display/ihaskell-hatex
- /opt/IHaskell/ihaskell-display/ihaskell-juicypixels
- /opt/IHaskell/ihaskell-display/ihaskell-magic
- /opt/IHaskell/ihaskell-display/ihaskell-plot
- /opt/IHaskell/ihaskell-display/ihaskell-rlangqq
- /opt/IHaskell/ihaskell-display/ihaskell-static-canvas
- /opt/IHaskell/ihaskell-display/ihaskell-widgets
- /opt/hvega/hvega
- /opt/hvega/ihaskell-hvega
- Chart-cairo-1.9.3
- cairo-0.13.10.0
- diagrams-cairo-1.4.2
- pango-0.13.10.0
- glib-0.13.10.0
- gtk2hs-buildtools-0.13.10.0
- plot-0.2.3.11

3
Program/haskell/stack-2.11.1-linux-x86_64.tar.gz
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@ -1,3 +0,0 @@
version https://git-lfs.github.com/spec/v1
oid sha256:408a120e824ed6e6b24c548a2ff6f210fcb0eed246f204a280ed4c75af0517e7
size 15552491

36
Program/haskell/stack.config.yaml
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@ -1,7 +1,5 @@
# Haskell Stack non-project-specific config for IHaskell.
# https://docs.haskellstack.org/en/stable/yaml_configuration/#non-project-specific-config
setup-info-locations:
- http://mirrors.ustc.edu.cn/stackage/stack-setup.yaml
- http://mirrors.ustc.edu.cn/stackage/stack-setup.yaml
urls:
latest-snapshot: http://mirrors.ustc.edu.cn/stackage/snapshots.json
snapshot-location-base: http://mirrors.ustc.edu.cn/stackage/stackage-snapshots/
@ -10,28 +8,16 @@ package-index:
download-prefix: https://mirrors.ustc.edu.cn/hackage/
hackage-security:
keyids:
- 0a5c7ea47cd1b15f01f5f51a33adda7e655bc0f0b0615baa8e271f4c3351e21d
- 1ea9ba32c526d1cc91ab5e5bd364ec5e9e8cb67179a471872f6e26f0ae773d42
- 280b10153a522681163658cb49f632cde3f38d768b736ddbc901d99a1a772833
- 2a96b1889dc221c17296fcc2bb34b908ca9734376f0f361660200935916ef201
- 2c6c3627bd6c982990239487f1abd02e08a02e6cf16edb105a8012d444d870c3
- 51f0161b906011b52c6613376b1ae937670da69322113a246a09f807c62f6921
- 772e9f4c7db33d251d5c6e357199c819e569d130857dc225549b40845ff0890d
- aa315286e6ad281ad61182235533c41e806e5a787e0b6d1e7eef3f09d137d2e9
- fe331502606802feac15e514d9b9ea83fee8b6ffef71335479a2e68d84adc6b0
- 0a5c7ea47cd1b15f01f5f51a33adda7e655bc0f0b0615baa8e271f4c3351e21d
- 1ea9ba32c526d1cc91ab5e5bd364ec5e9e8cb67179a471872f6e26f0ae773d42
- 280b10153a522681163658cb49f632cde3f38d768b736ddbc901d99a1a772833
- 2a96b1889dc221c17296fcc2bb34b908ca9734376f0f361660200935916ef201
- 2c6c3627bd6c982990239487f1abd02e08a02e6cf16edb105a8012d444d870c3
- 51f0161b906011b52c6613376b1ae937670da69322113a246a09f807c62f6921
- 772e9f4c7db33d251d5c6e357199c819e569d130857dc225549b40845ff0890d
- aa315286e6ad281ad61182235533c41e806e5a787e0b6d1e7eef3f09d137d2e9
- fe331502606802feac15e514d9b9ea83fee8b6ffef71335479a2e68d84adc6b0
key-threshold: 3 # number of keys required
# ignore expiration date, see https://github.com/commercialhaskell/stack/pull/4614
ignore-expiry: true
# So that all users, not just jovyan, can use the Stack default global project.
allow-different-user: true
# stack install products will go here, not in /home/$USER/.local/bin
local-bin-path: /opt/bin
# We're going to be loosey with version bounds.
allow-newer: true
# Force color
color: always
ignore-expiry: true

4
python/cpu/Dockerfile
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@ -13,8 +13,10 @@ ENV DEBIAN_FRONTEND=noninteractive \
PATH="/opt/base/bin:${PATH}" \
HOME="/home/jovyan"
# Copy files
# start script
COPY start-sh/* /usr/local/bin/
# jupyter config(to disable hide files)
COPY jupyter_server_config.py /etc/jupyter/
RUN sed -i 's/deb.debian.org/mirrors.ustc.edu.cn/g' /etc/apt/sources.list.d/debian.sources && \
# install base packages

61
python/cpu/jupyter_server_config.py Normal file
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@ -0,0 +1,61 @@
# Copyright (c) Jupyter Development Team.
# Distributed under the terms of the Modified BSD License.
# mypy: ignore-errors
import os
import stat
import subprocess
from pathlib import Path
from jupyter_core.paths import jupyter_data_dir
c = get_config() # noqa: F821
c.ServerApp.ip = "0.0.0.0"
c.ServerApp.open_browser = False
# to output both image/svg+xml and application/pdf plot formats in the notebook file
c.InlineBackend.figure_formats = {"png", "jpeg", "svg", "pdf"}
# https://github.com/jupyter/notebook/issues/3130
c.FileContentsManager.delete_to_trash = False
# https://github.com/jupyter/notebook/issues/7409
c.ContentsManager.hide_globs = []
# Generate a self-signed certificate
OPENSSL_CONFIG = """\
[req]
distinguished_name = req_distinguished_name
[req_distinguished_name]
"""
if "GEN_CERT" in os.environ:
dir_name = Path(jupyter_data_dir())
dir_name.mkdir(parents=True, exist_ok=True)
pem_file = dir_name / "notebook.pem"
# Generate an openssl.cnf file to set the distinguished name
cnf_file = Path(os.getenv("CONDA_DIR", "/usr/lib")) / "ssl/openssl.cnf"
if not cnf_file.exists():
cnf_file.write_text(OPENSSL_CONFIG)
# Generate a certificate if one doesn't exist on a disk
subprocess.check_call(
[
"openssl",
"req",
"-new",
"-newkey=rsa:2048",
"-days=365",
"-nodes",
"-x509",
"-subj=/C=XX/ST=XX/L=XX/O=generated/CN=generated",
f"-keyout={pem_file}",
f"-out={pem_file}",
]
)
# Restrict access to the file
pem_file.chmod(stat.S_IRUSR | stat.S_IWUSR)
c.ServerApp.certfile = str(pem_file)
# Change default umask for all subprocesses of the Server if set in the environment
if "NB_UMASK" in os.environ:
os.umask(int(os.environ["NB_UMASK"], 8))

5
python/gpu/Dockerfile
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@ -9,11 +9,14 @@ ENV DEBIAN_FRONTEND=noninteractive \
NB_USER=jovyan \
NB_UID=1000 \
NB_GID=100 \
SHELL=/bin/bash \
PATH="/opt/base/bin:${PATH}" \
HOME="/home/jovyan"
# Copy files
# start script
COPY start-sh/* /usr/local/bin/
# jupyter config(to disable hide files)
COPY jupyter_server_config.py /etc/jupyter/
RUN sed -i 's/deb.debian.org/mirrors.ustc.edu.cn/g' /etc/apt/sources.list.d/debian.sources && \
# install base packages

61
python/gpu/jupyter_server_config.py Normal file
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@ -0,0 +1,61 @@
# Copyright (c) Jupyter Development Team.
# Distributed under the terms of the Modified BSD License.
# mypy: ignore-errors
import os
import stat
import subprocess
from pathlib import Path
from jupyter_core.paths import jupyter_data_dir
c = get_config() # noqa: F821
c.ServerApp.ip = "0.0.0.0"
c.ServerApp.open_browser = False
# to output both image/svg+xml and application/pdf plot formats in the notebook file
c.InlineBackend.figure_formats = {"png", "jpeg", "svg", "pdf"}
# https://github.com/jupyter/notebook/issues/3130
c.FileContentsManager.delete_to_trash = False
# https://github.com/jupyter/notebook/issues/7409
c.ContentsManager.hide_globs = []
# Generate a self-signed certificate
OPENSSL_CONFIG = """\
[req]
distinguished_name = req_distinguished_name
[req_distinguished_name]
"""
if "GEN_CERT" in os.environ:
dir_name = Path(jupyter_data_dir())
dir_name.mkdir(parents=True, exist_ok=True)
pem_file = dir_name / "notebook.pem"
# Generate an openssl.cnf file to set the distinguished name
cnf_file = Path(os.getenv("CONDA_DIR", "/usr/lib")) / "ssl/openssl.cnf"
if not cnf_file.exists():
cnf_file.write_text(OPENSSL_CONFIG)
# Generate a certificate if one doesn't exist on a disk
subprocess.check_call(
[
"openssl",
"req",
"-new",
"-newkey=rsa:2048",
"-days=365",
"-nodes",
"-x509",
"-subj=/C=XX/ST=XX/L=XX/O=generated/CN=generated",
f"-keyout={pem_file}",
f"-out={pem_file}",
]
)
# Restrict access to the file
pem_file.chmod(stat.S_IRUSR | stat.S_IWUSR)
c.ServerApp.certfile = str(pem_file)
# Change default umask for all subprocesses of the Server if set in the environment
if "NB_UMASK" in os.environ:
os.umask(int(os.environ["NB_UMASK"], 8))