Add Cholesky, QR, and Triangular solve implementations.
* Adds lax.{cholesky,triangular_solve,qr}. Adds a JVP for Cholesky.
* Adds a transpose rule for add_p, needed by the Cholesky JVP.
* Adds np.linalg.{cholesky,qr,dot,matmul,trace}.
* Adds scipy.linalg.{cholesky,qr,solve_triangular,tril,triu}.
Pair programmed with mattjj.
2018-12-13 13:03:08 -05:00
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# Copyright 2018 Google LLC
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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#
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# https://www.apache.org/licenses/LICENSE-2.0
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#
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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from __future__ import absolute_import
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from __future__ import division
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from __future__ import print_function
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import numpy as onp
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from jax.numpy import lax_numpy as np
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from jax import core
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from jax import lax
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from jax.interpreters import xla
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from jax.interpreters import ad
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from jax.util import partial
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from jax.abstract_arrays import ShapedArray
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from jax.core import Primitive
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from jax.lax import (standard_primitive, standard_unop, binop_dtype_rule,
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_float, _complex, _input_dtype)
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2018-12-20 15:37:34 -05:00
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from jaxlib import lapack
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Add Cholesky, QR, and Triangular solve implementations.
* Adds lax.{cholesky,triangular_solve,qr}. Adds a JVP for Cholesky.
* Adds a transpose rule for add_p, needed by the Cholesky JVP.
* Adds np.linalg.{cholesky,qr,dot,matmul,trace}.
* Adds scipy.linalg.{cholesky,qr,solve_triangular,tril,triu}.
Pair programmed with mattjj.
2018-12-13 13:03:08 -05:00
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# traceables
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def cholesky(x): return cholesky_p.bind(x)
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2018-12-20 15:37:34 -05:00
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def lu(x): return lu_p.bind(x)
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Add Cholesky, QR, and Triangular solve implementations.
* Adds lax.{cholesky,triangular_solve,qr}. Adds a JVP for Cholesky.
* Adds a transpose rule for add_p, needed by the Cholesky JVP.
* Adds np.linalg.{cholesky,qr,dot,matmul,trace}.
* Adds scipy.linalg.{cholesky,qr,solve_triangular,tril,triu}.
Pair programmed with mattjj.
2018-12-13 13:03:08 -05:00
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def qr(x, full_matrices=True):
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q, r = qr_p.bind(x, full_matrices=full_matrices)
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return q, r
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def triangular_solve(a, b, left_side=False, lower=False, transpose_a=False,
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conjugate_a=False):
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return triangular_solve_p.bind(
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a, b, left_side=left_side, lower=lower, transpose_a=transpose_a,
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conjugate_a=conjugate_a)
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# utilities
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def _T(x):
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return np.swapaxes(x, -1, -2)
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# primitives
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def cholesky_jvp_rule(primals, tangents):
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x, = primals
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sigma_dot, = tangents
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L = cholesky_p.bind(x)
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# Forward-mode rule from https://arxiv.org/pdf/1602.07527.pdf
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sigma_dot = (sigma_dot + _T(sigma_dot)) / 2
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phi = lambda X: np.tril(X) / (1 + np.eye(x.shape[-1]))
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tmp = triangular_solve(L, sigma_dot,
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left_side=False, transpose_a=True, lower=True)
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L_dot = lax.dot(L, phi(triangular_solve(
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L, tmp, left_side=True, transpose_a=False, lower=True)))
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return L, L_dot
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cholesky_p = standard_unop(_float, 'cholesky')
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ad.primitive_jvps[cholesky_p] = cholesky_jvp_rule
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2018-12-17 14:36:21 -05:00
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def cholesky_cpu_translation_rule(c, operand):
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shape = c.GetShape(operand)
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2018-12-17 16:39:19 -05:00
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if len(shape.dimensions()) == 2 and (
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shape.element_type() == np.float32 or shape.element_type() == np.float64):
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2018-12-20 15:37:34 -05:00
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return c.GetTupleElement(lapack.jax_potrf(c, operand, lower=True), 0)
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2018-12-17 14:36:21 -05:00
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else:
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# Fall back to the HLO implementation for batched Cholesky decomposition or
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# unsupported types.
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# TODO(phawkins): support LAPACK primitives in batched mode.
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return c.Cholesky(operand)
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2018-12-20 15:37:34 -05:00
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xla.backend_specific_translations['Host'][cholesky_p] = cholesky_cpu_translation_rule
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2018-12-17 14:36:21 -05:00
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Add Cholesky, QR, and Triangular solve implementations.
* Adds lax.{cholesky,triangular_solve,qr}. Adds a JVP for Cholesky.
* Adds a transpose rule for add_p, needed by the Cholesky JVP.
* Adds np.linalg.{cholesky,qr,dot,matmul,trace}.
* Adds scipy.linalg.{cholesky,qr,solve_triangular,tril,triu}.
Pair programmed with mattjj.
2018-12-13 13:03:08 -05:00
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triangular_solve_dtype_rule = partial(
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binop_dtype_rule, _input_dtype, (_float | _complex, _float | _complex),
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'triangular_solve')
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def triangular_solve_shape_rule(a, b, left_side=False, **unused_kwargs):
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if a.ndim < 2:
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msg = "triangular_solve requires a.ndim to be at least 2, got {}."
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raise TypeError(msg.format(a.ndim))
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if a.shape[-1] != a.shape[-2]:
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msg = ("triangular_solve requires the last two dimensions of a to be equal "
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"in size, got a.shape of {}.")
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raise TypeError(msg.format(a.shape))
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if a.shape[:-2] != b.shape[:-2]:
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msg = ("triangular_solve requires both arguments to have the same number "
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"of dimensions and equal batch dimensions, got {} and {}.")
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raise TypeError(msg.format(a.shape, b.shape))
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common_dim = -2 if left_side else -1
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if a.shape[-1] != b.shape[common_dim]:
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msg = "Incompatible shapes for arguments to triangular_solve: {} and {}."
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raise TypeError(msg.format(a.shape, b.shape))
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return b.shape
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2018-12-17 17:20:52 -08:00
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def triangular_solve_jvp_rule_a(
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g_a, ans, a, b, left_side, lower, transpose_a, conjugate_a):
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g_a = lax.neg(g_a)
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2018-12-19 17:47:56 -05:00
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g_a = np.swapaxes(g_a, -1, -2) if transpose_a else g_a
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2018-12-17 17:20:52 -08:00
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tmp = triangular_solve(a, g_a, left_side, lower, transpose_a, conjugate_a)
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dot = lax.dot if g_a.ndim == 2 else lax.batch_matmul
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if left_side:
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return dot(tmp, ans)
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else:
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return dot(ans, tmp)
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Add Cholesky, QR, and Triangular solve implementations.
* Adds lax.{cholesky,triangular_solve,qr}. Adds a JVP for Cholesky.
* Adds a transpose rule for add_p, needed by the Cholesky JVP.
* Adds np.linalg.{cholesky,qr,dot,matmul,trace}.
* Adds scipy.linalg.{cholesky,qr,solve_triangular,tril,triu}.
Pair programmed with mattjj.
2018-12-13 13:03:08 -05:00
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def triangular_solve_transpose_rule(
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cotangent, a, b, left_side, lower, transpose_a, conjugate_a):
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assert a is not None and b is None
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cotangent_b = triangular_solve(a, cotangent, left_side, lower,
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not transpose_a, conjugate_a)
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return [None, cotangent_b]
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triangular_solve_p = standard_primitive(
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triangular_solve_shape_rule, triangular_solve_dtype_rule,
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'triangular_solve')
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2018-12-17 17:20:52 -08:00
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ad.defjvp2(triangular_solve_p,
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triangular_solve_jvp_rule_a,
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lambda g_b, _, a, b, **kws: triangular_solve(a, g_b, **kws))
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Add Cholesky, QR, and Triangular solve implementations.
* Adds lax.{cholesky,triangular_solve,qr}. Adds a JVP for Cholesky.
* Adds a transpose rule for add_p, needed by the Cholesky JVP.
* Adds np.linalg.{cholesky,qr,dot,matmul,trace}.
* Adds scipy.linalg.{cholesky,qr,solve_triangular,tril,triu}.
Pair programmed with mattjj.
2018-12-13 13:03:08 -05:00
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ad.primitive_transposes[triangular_solve_p] = triangular_solve_transpose_rule
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2018-12-17 16:39:19 -05:00
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def triangular_solve_cpu_translation_rule(
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c, a, b, left_side, lower, transpose_a, conjugate_a):
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shape = c.GetShape(a)
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if len(shape.dimensions()) == 2 and shape.element_type() == np.float32:
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2018-12-20 15:37:34 -05:00
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return lapack.jax_trsm(
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2018-12-17 17:52:16 -05:00
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c, c.ConstantF32Scalar(1.0), a, b, left_side, lower, transpose_a,
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conjugate_a)
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2018-12-17 16:39:19 -05:00
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elif len(shape.dimensions()) == 2 and shape.element_type() == np.float64:
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2018-12-20 15:37:34 -05:00
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return lapack.jax_trsm(
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2018-12-17 17:52:16 -05:00
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c, c.ConstantF64Scalar(1.0), a, b, left_side, lower, transpose_a,
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conjugate_a)
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2018-12-17 16:39:19 -05:00
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else:
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# Fall back to the HLO implementation for batched triangular_solve or
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# unsupported types.
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# TODO(phawkins): support BLAS primitives in batched mode.
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return c.TriangularSolve(a, b, left_side, lower, transpose_a, conjugate_a)
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2018-12-20 15:37:34 -05:00
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xla.backend_specific_translations['Host'][triangular_solve_p] = triangular_solve_cpu_translation_rule
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# LU decomposition
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# Computes a pivoted LU decomposition such that
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# PA = LU
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# In the style of LAPACK, LU are stored in the same matrix.
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# TODO(phawkins): add a mechanism to report errors for singular matrices.
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def lu_impl(operand):
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lu, pivot = xla.apply_primitive(lu_p, operand)
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return core.pack((lu, pivot))
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def lu_translation_rule(c, operand):
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raise NotImplementedError(
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"LU decomposition is only implemented on the CPU backend")
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def lu_abstract_eval(operand):
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if isinstance(operand, ShapedArray):
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if operand.ndim < 2:
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raise ValueError("Argument to LU decomposition must have ndims >= 2")
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batch_dims = operand.shape[:-2]
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m = operand.shape[-2]
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n = operand.shape[-1]
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pivot = ShapedArray(batch_dims + (min(m, n),), np.int32)
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else:
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pivot = operand
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return core.AbstractTuple((operand, pivot))
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lu_p = Primitive('lu')
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lu_p.def_impl(lu_impl)
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lu_p.def_abstract_eval(lu_abstract_eval)
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xla.translations[lu_p] = lu_translation_rule
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2018-12-20 22:18:20 -05:00
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_lu_cpu_types = {np.float32, np.float64, np.complex64}
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2018-12-20 15:37:34 -05:00
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def lu_cpu_translation_rule(c, operand):
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shape = c.GetShape(operand)
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2018-12-20 22:18:20 -05:00
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if len(shape.dimensions()) == 2 and shape.element_type().type in _lu_cpu_types:
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2018-12-20 15:37:34 -05:00
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out = lapack.jax_getrf(c, operand)
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lu = c.GetTupleElement(out, 0)
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# Subtract 1 from the pivot to get 0-based indices.
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pivot = c.Sub(c.GetTupleElement(out, 1), c.ConstantS32Scalar(1))
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# Throw away the `info` value, because we have no way to report errors.
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return c.Tuple(lu, pivot)
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else:
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raise NotImplementedError("Only unbatched LU decomposition is implemented")
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2018-12-20 21:04:02 -05:00
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# TODO(phawkins): The hasattr() test here is to avoid incompatibilities between
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# jax and an older jaxlib. Remove after a jaxlib release includes jax_getrf.
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if hasattr(lapack, "jax_getrf"):
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xla.backend_specific_translations['Host'][lu_p] = lu_cpu_translation_rule
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2018-12-17 16:39:19 -05:00
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2018-12-20 15:37:34 -05:00
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def lu_pivots_to_permutation(swaps, k):
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"""Converts the pivots (row swaps) returned by LU to a permutation."""
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def body_fn(i, loop_carry):
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swaps, permutation = loop_carry
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j = swaps[i]
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x, y = np.ravel(permutation[i]), np.ravel(permutation[j])
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permutation = lax.dynamic_update_index_in_dim(permutation, y, i, axis=0)
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permutation = lax.dynamic_update_index_in_dim(permutation, x, j, axis=0)
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return swaps, permutation
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n, = np.shape(swaps)
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permutation = np.arange(k)
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_, permutation = lax.fori_loop(onp.array(0, onp.int32), onp.array(n, onp.int32),
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body_fn, (swaps, permutation))
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return permutation
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# QR decomposition
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Add Cholesky, QR, and Triangular solve implementations.
* Adds lax.{cholesky,triangular_solve,qr}. Adds a JVP for Cholesky.
* Adds a transpose rule for add_p, needed by the Cholesky JVP.
* Adds np.linalg.{cholesky,qr,dot,matmul,trace}.
* Adds scipy.linalg.{cholesky,qr,solve_triangular,tril,triu}.
Pair programmed with mattjj.
2018-12-13 13:03:08 -05:00
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def qr_impl(operand, full_matrices):
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q, r = xla.apply_primitive(qr_p, operand, full_matrices=full_matrices)
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return core.pack((q, r))
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def qr_translation_rule(c, operand, full_matrices):
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return c.QR(operand, full_matrices=full_matrices)
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def qr_abstract_eval(operand, full_matrices):
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if isinstance(operand, ShapedArray):
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if operand.ndim < 2:
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raise ValueError("Argument to QR decomposition must have ndims >= 2")
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batch_dims = operand.shape[:-2]
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m = operand.shape[-2]
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n = operand.shape[-1]
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k = m if full_matrices else min(m, n)
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q = ShapedArray(batch_dims + (m, k), operand.dtype)
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r = ShapedArray(batch_dims + (k, n), operand.dtype)
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else:
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q = operand
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r = operand
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return core.AbstractTuple((q, r))
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2018-12-17 16:02:29 +00:00
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def qr_jvp_rule(primals, tangents, full_matrices):
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2018-12-17 16:04:51 +00:00
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# See j-towns.github.io/papers/qr-derivative.pdf for a terse derivation.
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2018-12-17 16:02:29 +00:00
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x, = primals
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2018-12-17 16:36:55 +00:00
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if full_matrices or np.shape(x)[-2] < np.shape(x)[-1]:
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raise NotImplementedError
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2018-12-17 16:02:29 +00:00
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dx, = tangents
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q, r = qr_p.bind(x, full_matrices=False)
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dx_rinv = triangular_solve(r, dx) # Right side solve by default
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qt_dx_rinv = np.matmul(_T(q), dx_rinv)
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qt_dx_rinv_lower = np.tril(qt_dx_rinv, -1)
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domega = qt_dx_rinv_lower - _T(qt_dx_rinv_lower) # This is skew-symmetric
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dq = np.matmul(q, domega - qt_dx_rinv) + dx_rinv
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dr = np.matmul(qt_dx_rinv - domega, r)
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return core.pack((q, r)), core.pack((dq, dr))
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Add Cholesky, QR, and Triangular solve implementations.
* Adds lax.{cholesky,triangular_solve,qr}. Adds a JVP for Cholesky.
* Adds a transpose rule for add_p, needed by the Cholesky JVP.
* Adds np.linalg.{cholesky,qr,dot,matmul,trace}.
* Adds scipy.linalg.{cholesky,qr,solve_triangular,tril,triu}.
Pair programmed with mattjj.
2018-12-13 13:03:08 -05:00
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qr_p = Primitive('qr')
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qr_p.def_impl(qr_impl)
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qr_p.def_abstract_eval(qr_abstract_eval)
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xla.translations[qr_p] = qr_translation_rule
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2018-12-17 16:02:29 +00:00
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ad.primitive_jvps[qr_p] = qr_jvp_rule
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