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rocm_jax/tests/lax_scipy_test.py
YouJiacheng b485b8e5ce implement scipy.cluster.vq.vq 
also add no check_finite and overwrite_* docstring for some scipy.linalg functions
2022-04-23 03:14:32 +08:00

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# Copyright 2018 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# https://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import collections
import functools
from functools import partial
import itertools
import unittest
from absl.testing import absltest
from absl.testing import parameterized
import numpy as np
import scipy.special as osp_special
import scipy.cluster as osp_cluster
import jax
from jax import numpy as jnp
from jax import lax
from jax import scipy as jsp
from jax._src import test_util as jtu
from jax.scipy import special as lsp_special
from jax.scipy import cluster as lsp_cluster
import jax._src.scipy.eigh
from jax.config import config
config.parse_flags_with_absl()
FLAGS = config.FLAGS
all_shapes = [(), (4,), (3, 4), (3, 1), (1, 4), (2, 1, 4)]
compatible_shapes = [[(), ()],
[(4,), (3, 4)],
[(3, 1), (1, 4)],
[(2, 3, 4), (2, 1, 4)]]
float_dtypes = jtu.dtypes.floating
complex_dtypes = jtu.dtypes.complex
int_dtypes = jtu.dtypes.integer
# Params for the polar tests.
polar_shapes = [(16, 12), (12, 16), (128, 128)]
n_zero_svs = [0, 4]
degeneracies = [0, 4]
geometric_spectra = [False, True]
max_svs = [0.1, 10.]
nonzero_condition_numbers = [0.1, 100000]
sides = ["right", "left"]
methods = ["qdwh", "svd"]
seeds = [1, 10]
linear_sizes = [16, 128, 256]
def _initialize_polar_test(rng, shape, n_zero_svs, degeneracy, geometric_spectrum,
max_sv, nonzero_condition_number, dtype):
n_rows, n_cols = shape
min_dim = min(shape)
left_vecs = rng.randn(n_rows, min_dim).astype(np.float64)
left_vecs, _ = np.linalg.qr(left_vecs)
right_vecs = rng.randn(n_cols, min_dim).astype(np.float64)
right_vecs, _ = np.linalg.qr(right_vecs)
min_nonzero_sv = max_sv / nonzero_condition_number
num_nonzero_svs = min_dim - n_zero_svs
if geometric_spectrum:
nonzero_svs = np.geomspace(min_nonzero_sv, max_sv, num=num_nonzero_svs,
dtype=np.float64)
else:
nonzero_svs = np.linspace(min_nonzero_sv, max_sv, num=num_nonzero_svs,
dtype=np.float64)
half_point = n_zero_svs // 2
for i in range(half_point, half_point + degeneracy):
nonzero_svs[i] = nonzero_svs[half_point]
svs = np.zeros(min(shape), dtype=np.float64)
svs[n_zero_svs:] = nonzero_svs
svs = svs[::-1]
result = np.dot(left_vecs * svs, right_vecs.conj().T)
result = jnp.array(result).astype(dtype)
spectrum = jnp.array(svs).astype(dtype)
return result, spectrum
OpRecord = collections.namedtuple(
"OpRecord",
["name", "nargs", "dtypes", "rng_factory", "test_autodiff", "nondiff_argnums", "test_name"])
def op_record(name, nargs, dtypes, rng_factory, test_grad, nondiff_argnums=(), test_name=None):
test_name = test_name or name
nondiff_argnums = tuple(sorted(set(nondiff_argnums)))
return OpRecord(name, nargs, dtypes, rng_factory, test_grad, nondiff_argnums, test_name)
# TODO(phawkins): we should probably separate out the function domains used for
# autodiff tests from the function domains used for equivalence testing. For
# example, logit should closely match its scipy equivalent everywhere, but we
# don't expect numerical gradient tests to pass for inputs very close to 0.
JAX_SPECIAL_FUNCTION_RECORDS = [
op_record("betaln", 2, float_dtypes, jtu.rand_positive, False),
op_record("betainc", 3, float_dtypes, jtu.rand_positive, False),
op_record("digamma", 1, float_dtypes, jtu.rand_positive, True),
op_record("gammainc", 2, float_dtypes, jtu.rand_positive, True),
op_record("gammaincc", 2, float_dtypes, jtu.rand_positive, True),
op_record("erf", 1, float_dtypes, jtu.rand_small_positive, True),
op_record("erfc", 1, float_dtypes, jtu.rand_small_positive, True),
op_record("erfinv", 1, float_dtypes, jtu.rand_small_positive, True),
op_record("expit", 1, float_dtypes, jtu.rand_small_positive, True),
# TODO: gammaln has slightly high error.
op_record("gammaln", 1, float_dtypes, jtu.rand_positive, False),
op_record("i0", 1, float_dtypes, jtu.rand_default, True),
op_record("i0e", 1, float_dtypes, jtu.rand_default, True),
op_record("i1", 1, float_dtypes, jtu.rand_default, True),
op_record("i1e", 1, float_dtypes, jtu.rand_default, True),
op_record("logit", 1, float_dtypes, partial(jtu.rand_uniform, low=0.05,
high=0.95), True),
op_record("log_ndtr", 1, float_dtypes, jtu.rand_default, True),
op_record("ndtri", 1, float_dtypes, partial(jtu.rand_uniform, low=0.05,
high=0.95),
True),
op_record("ndtr", 1, float_dtypes, jtu.rand_default, True),
# TODO(phawkins): gradient of entr yields NaNs.
op_record("entr", 1, float_dtypes, jtu.rand_default, False),
op_record("polygamma", 2, (int_dtypes, float_dtypes), jtu.rand_positive, True, (0,)),
op_record("xlogy", 2, float_dtypes, jtu.rand_positive, True),
op_record("xlog1py", 2, float_dtypes, jtu.rand_default, True),
# TODO: enable gradient test for zeta by restricting the domain of
# of inputs to some reasonable intervals
op_record("zeta", 2, float_dtypes, jtu.rand_positive, False),
# TODO: float64 produces aborts on gpu, potentially related to use of jnp.piecewise
op_record("expi", 1, [np.float32], jtu.rand_default, True),
op_record("exp1", 1, [np.float32], jtu.rand_positive, True),
op_record("expn", 2, (int_dtypes, [np.float32]), jtu.rand_positive, True, (0,)),
]
class LaxBackedScipyTests(jtu.JaxTestCase):
"""Tests for LAX-backed Scipy implementation."""
def _GetArgsMaker(self, rng, shapes, dtypes):
return lambda: [rng(shape, dtype) for shape, dtype in zip(shapes, dtypes)]
@parameterized.named_parameters(jtu.cases_from_list(
{"testcase_name":
"_shapes={}_axis={}_keepdims={}_return_sign={}_use_b_{}".format(
jtu.format_shape_dtype_string(shapes, dtype),
axis, keepdims, return_sign, use_b),
# TODO(b/133842870): re-enable when exp(nan) returns NaN on CPU.
"shapes": shapes, "dtype": dtype,
"axis": axis, "keepdims": keepdims,
"return_sign": return_sign, "use_b": use_b}
for shape_group in compatible_shapes for dtype in float_dtypes + complex_dtypes + int_dtypes
for use_b in [False, True]
for shapes in itertools.product(*(
(shape_group, shape_group) if use_b else (shape_group,)))
for axis in range(-max(len(shape) for shape in shapes),
max(len(shape) for shape in shapes))
for keepdims in [False, True]
for return_sign in [False, True]))
@jtu.ignore_warning(category=RuntimeWarning, message="invalid value encountered in .*")
@jax.numpy_rank_promotion('allow') # This test explicitly exercises implicit rank promotion.
def testLogSumExp(self, shapes, dtype, axis,
keepdims, return_sign, use_b):
if jtu.device_under_test() != "cpu":
rng = jtu.rand_some_inf_and_nan(self.rng())
else:
rng = jtu.rand_default(self.rng())
# TODO(mattjj): test autodiff
if use_b:
def scipy_fun(array_to_reduce, scale_array):
return osp_special.logsumexp(array_to_reduce, axis, keepdims=keepdims,
return_sign=return_sign, b=scale_array)
def lax_fun(array_to_reduce, scale_array):
return lsp_special.logsumexp(array_to_reduce, axis, keepdims=keepdims,
return_sign=return_sign, b=scale_array)
args_maker = lambda: [rng(shapes[0], dtype), rng(shapes[1], dtype)]
else:
def scipy_fun(array_to_reduce):
return osp_special.logsumexp(array_to_reduce, axis, keepdims=keepdims,
return_sign=return_sign)
def lax_fun(array_to_reduce):
return lsp_special.logsumexp(array_to_reduce, axis, keepdims=keepdims,
return_sign=return_sign)
args_maker = lambda: [rng(shapes[0], dtype)]
tol = {np.float32: 1E-6, np.float64: 1E-14}
self._CheckAgainstNumpy(scipy_fun, lax_fun, args_maker)
self._CompileAndCheck(lax_fun, args_maker, rtol=tol, atol=tol)
def testLogSumExpZeros(self):
# Regression test for https://github.com/google/jax/issues/5370
scipy_fun = lambda a, b: osp_special.logsumexp(a, b=b)
lax_fun = lambda a, b: lsp_special.logsumexp(a, b=b)
args_maker = lambda: [np.array([-1000, -2]), np.array([1, 0])]
self._CheckAgainstNumpy(scipy_fun, lax_fun, args_maker)
self._CompileAndCheck(lax_fun, args_maker)
def testLogSumExpOnes(self):
# Regression test for https://github.com/google/jax/issues/7390
args_maker = lambda: [np.ones(4, dtype='float32')]
with jax.debug_infs(True):
self._CheckAgainstNumpy(osp_special.logsumexp, lsp_special.logsumexp, args_maker)
self._CompileAndCheck(lsp_special.logsumexp, args_maker)
def testLogSumExpNans(self):
# Regression test for https://github.com/google/jax/issues/7634
with jax.debug_nans(True):
with jax.disable_jit():
result = lsp_special.logsumexp(1.0)
self.assertEqual(result, 1.0)
result = lsp_special.logsumexp(1.0, b=1.0)
self.assertEqual(result, 1.0)
@parameterized.named_parameters(itertools.chain.from_iterable(
jtu.cases_from_list(
{"testcase_name": jtu.format_test_name_suffix(
rec.test_name, shapes, dtypes),
"rng_factory": rec.rng_factory, "shapes": shapes, "dtypes": dtypes,
"test_autodiff": rec.test_autodiff,
"nondiff_argnums": rec.nondiff_argnums,
"scipy_op": getattr(osp_special, rec.name),
"lax_op": getattr(lsp_special, rec.name)}
for shapes in itertools.combinations_with_replacement(all_shapes, rec.nargs)
for dtypes in (itertools.combinations_with_replacement(rec.dtypes, rec.nargs)
if isinstance(rec.dtypes, list) else itertools.product(*rec.dtypes)))
for rec in JAX_SPECIAL_FUNCTION_RECORDS))
@jax.numpy_rank_promotion('allow') # This test explicitly exercises implicit rank promotion.
def testScipySpecialFun(self, scipy_op, lax_op, rng_factory, shapes, dtypes,
test_autodiff, nondiff_argnums):
if (jtu.device_under_test() == "cpu" and
(lax_op is lsp_special.gammainc or lax_op is lsp_special.gammaincc)):
# TODO(b/173608403): re-enable test when LLVM bug is fixed.
raise unittest.SkipTest("Skipping test due to LLVM lowering bug")
rng = rng_factory(self.rng())
args_maker = self._GetArgsMaker(rng, shapes, dtypes)
args = args_maker()
self.assertAllClose(scipy_op(*args), lax_op(*args), atol=1e-3, rtol=1e-3,
check_dtypes=False)
self._CompileAndCheck(lax_op, args_maker, rtol=1e-4)
if test_autodiff:
def partial_lax_op(*vals):
list_args = list(vals)
for i in nondiff_argnums:
list_args.insert(i, args[i])
return lax_op(*list_args)
assert list(nondiff_argnums) == sorted(set(nondiff_argnums))
diff_args = [x for i, x in enumerate(args) if i not in nondiff_argnums]
jtu.check_grads(partial_lax_op, diff_args, order=1,
atol=jtu.if_device_under_test("tpu", .1, 1e-3),
rtol=.1, eps=1e-3)
@parameterized.named_parameters(jtu.cases_from_list(
{"testcase_name": "_inshape={}_d={}".format(
jtu.format_shape_dtype_string(shape, dtype), d),
"shape": shape, "dtype": dtype, "d": d}
for shape in all_shapes
for dtype in float_dtypes
for d in [1, 2, 5]))
@jax.numpy_rank_promotion('raise')
def testMultigammaln(self, shape, dtype, d):
def scipy_fun(a):
return osp_special.multigammaln(a, d)
def lax_fun(a):
return lsp_special.multigammaln(a, d)
rng = jtu.rand_positive(self.rng())
args_maker = lambda: [rng(shape, dtype) + (d - 1) / 2.]
self._CheckAgainstNumpy(scipy_fun, lax_fun, args_maker,
tol={np.float32: 1e-3, np.float64: 1e-14})
self._CompileAndCheck(
lax_fun, args_maker, rtol={
np.float32: 3e-07,
np.float64: 4e-15
})
def testIssue980(self):
x = np.full((4,), -1e20, dtype=np.float32)
self.assertAllClose(np.zeros((4,), dtype=np.float32),
lsp_special.expit(x))
@jax.numpy_rank_promotion('raise')
def testIssue3758(self):
x = np.array([1e5, 1e19, 1e10], dtype=np.float32)
q = np.array([1., 40., 30.], dtype=np.float32)
self.assertAllClose(np.array([1., 0., 0.], dtype=np.float32), lsp_special.zeta(x, q))
def testXlogyShouldReturnZero(self):
self.assertAllClose(lsp_special.xlogy(0., 0.), 0., check_dtypes=False)
def testGradOfXlogyAtZero(self):
partial_xlogy = functools.partial(lsp_special.xlogy, 0.)
self.assertAllClose(jax.grad(partial_xlogy)(0.), 0., check_dtypes=False)
def testXlog1pyShouldReturnZero(self):
self.assertAllClose(lsp_special.xlog1py(0., -1.), 0., check_dtypes=False)
def testGradOfXlog1pyAtZero(self):
partial_xlog1py = functools.partial(lsp_special.xlog1py, 0.)
self.assertAllClose(jax.grad(partial_xlog1py)(-1.), 0., check_dtypes=False)
@parameterized.named_parameters(jtu.cases_from_list(
{"testcase_name": "_{}_lmax={}".format(
jtu.format_shape_dtype_string(shape, dtype), l_max),
"l_max": l_max, "shape": shape, "dtype": dtype}
for l_max in [1, 2, 3]
for shape in [(5,), (10,)]
for dtype in float_dtypes))
def testLpmn(self, l_max, shape, dtype):
rng = jtu.rand_uniform(self.rng(), low=-0.2, high=0.9)
args_maker = lambda: [rng(shape, dtype)]
lax_fun = partial(lsp_special.lpmn, l_max, l_max)
def scipy_fun(z, m=l_max, n=l_max):
# scipy only supports scalar inputs for z, so we must loop here.
vals, derivs = zip(*(osp_special.lpmn(m, n, zi) for zi in z))
return np.dstack(vals), np.dstack(derivs)
self._CheckAgainstNumpy(scipy_fun, lax_fun, args_maker, rtol=1e-6, atol=1e-6)
self._CompileAndCheck(lax_fun, args_maker, rtol=1E-6, atol=1E-6)
@parameterized.named_parameters(jtu.cases_from_list(
{"testcase_name": "_{}_lmax={}".format(
jtu.format_shape_dtype_string(shape, dtype), l_max),
"l_max": l_max, "shape": shape, "dtype": dtype}
for l_max in [3, 4, 6, 32]
for shape in [(2,), (3,), (4,), (64,)]
for dtype in float_dtypes))
def testNormalizedLpmnValues(self, l_max, shape, dtype):
rng = jtu.rand_uniform(self.rng(), low=-0.2, high=0.9)
args_maker = lambda: [rng(shape, dtype)]
# Note: we test only the normalized values, not the derivatives.
lax_fun = partial(lsp_special.lpmn_values, l_max, l_max, is_normalized=True)
def scipy_fun(z, m=l_max, n=l_max):
# scipy only supports scalar inputs for z, so we must loop here.
vals, _ = zip(*(osp_special.lpmn(m, n, zi) for zi in z))
a = np.dstack(vals)
# apply the normalization
num_m, num_l, _ = a.shape
a_normalized = np.zeros_like(a)
for m in range(num_m):
for l in range(num_l):
c0 = (2.0 * l + 1.0) * osp_special.factorial(l - m)
c1 = (4.0 * np.pi) * osp_special.factorial(l + m)
c2 = np.sqrt(c0 / c1)
a_normalized[m, l] = c2 * a[m, l]
return a_normalized
self._CheckAgainstNumpy(scipy_fun, lax_fun, args_maker, rtol=1e-5, atol=1e-5)
self._CompileAndCheck(lax_fun, args_maker, rtol=1E-6, atol=1E-6)
def testSphHarmAccuracy(self):
m = jnp.arange(-3, 3)[:, None]
n = jnp.arange(3, 6)
n_max = 5
theta = 0.0
phi = jnp.pi
expected = lsp_special.sph_harm(m, n, theta, phi, n_max)
actual = osp_special.sph_harm(m, n, theta, phi)
self.assertAllClose(actual, expected, rtol=1e-8, atol=9e-5)
def testSphHarmOrderZeroDegreeZero(self):
"""Tests the spherical harmonics of order zero and degree zero."""
theta = jnp.array([0.3])
phi = jnp.array([2.3])
n_max = 0
expected = jnp.array([1.0 / jnp.sqrt(4.0 * np.pi)])
actual = jnp.real(
lsp_special.sph_harm(jnp.array([0]), jnp.array([0]), theta, phi, n_max))
self.assertAllClose(actual, expected, rtol=1.1e-7, atol=3e-8)
@jtu.skip_on_devices("rocm") # rtol and atol needs to be adjusted for ROCm
def testSphHarmOrderZeroDegreeOne(self):
"""Tests the spherical harmonics of order one and degree zero."""
theta = jnp.array([2.0])
phi = jnp.array([3.1])
n_max = 1
expected = jnp.sqrt(3.0 / (4.0 * np.pi)) * jnp.cos(phi)
actual = jnp.real(
lsp_special.sph_harm(jnp.array([0]), jnp.array([1]), theta, phi, n_max))
self.assertAllClose(actual, expected, rtol=2e-7, atol=6e-8)
def testSphHarmOrderOneDegreeOne(self):
"""Tests the spherical harmonics of order one and degree one."""
theta = jnp.array([2.0])
phi = jnp.array([2.5])
n_max = 1
expected = (-1.0 / 2.0 * jnp.sqrt(3.0 / (2.0 * np.pi)) *
jnp.sin(phi) * jnp.exp(1j * theta))
actual = lsp_special.sph_harm(
jnp.array([1]), jnp.array([1]), theta, phi, n_max)
self.assertAllClose(actual, expected, rtol=1e-8, atol=6e-8)
@parameterized.named_parameters(jtu.cases_from_list(
{'testcase_name': '_maxdegree={}_inputsize={}_dtype={}'.format(
l_max, num_z, dtype),
'l_max': l_max, 'num_z': num_z, 'dtype': dtype}
for l_max, num_z in zip([1, 3, 8, 10], [2, 6, 7, 8])
for dtype in jtu.dtypes.all_integer))
def testSphHarmForJitAndAgainstNumpy(self, l_max, num_z, dtype):
"""Tests against JIT compatibility and Numpy."""
n_max = l_max
shape = (num_z,)
rng = jtu.rand_int(self.rng(), -l_max, l_max + 1)
lsp_special_fn = partial(lsp_special.sph_harm, n_max=n_max)
def args_maker():
m = rng(shape, dtype)
n = abs(m)
theta = jnp.linspace(-4.0, 5.0, num_z)
phi = jnp.linspace(-2.0, 1.0, num_z)
return m, n, theta, phi
with self.subTest('Test JIT compatibility'):
self._CompileAndCheck(lsp_special_fn, args_maker)
with self.subTest('Test against numpy.'):
self._CheckAgainstNumpy(osp_special.sph_harm, lsp_special_fn, args_maker)
def testSphHarmCornerCaseWithWrongNmax(self):
"""Tests the corner case where `n_max` is not the maximum value of `n`."""
m = jnp.array([2])
n = jnp.array([10])
n_clipped = jnp.array([6])
n_max = 6
theta = jnp.array([0.9])
phi = jnp.array([0.2])
expected = lsp_special.sph_harm(m, n, theta, phi, n_max)
actual = lsp_special.sph_harm(m, n_clipped, theta, phi, n_max)
self.assertAllClose(actual, expected, rtol=1e-8, atol=9e-5)
@parameterized.named_parameters(jtu.cases_from_list(
{'testcase_name':
'_shape={}'
'_n_zero_sv={}_degeneracy={}_geometric_spectrum={}'
'_max_sv={}_method={}_side={}'
'_nonzero_condition_number={}_seed={}'.format(
jtu.format_shape_dtype_string(
shape, jnp.dtype(dtype).name).replace(" ", ""),
n_zero_sv, degeneracy, geometric_spectrum, max_sv,
method, side, nonzero_condition_number, seed
),
'n_zero_sv': n_zero_sv, 'degeneracy': degeneracy,
'geometric_spectrum': geometric_spectrum,
'max_sv': max_sv, 'shape': shape, 'method': method,
'side': side, 'nonzero_condition_number': nonzero_condition_number,
'dtype': dtype, 'seed': seed}
for n_zero_sv in n_zero_svs
for degeneracy in degeneracies
for geometric_spectrum in geometric_spectra
for max_sv in max_svs
for shape in polar_shapes
for method in methods
for side in sides
for nonzero_condition_number in nonzero_condition_numbers
for dtype in jtu.dtypes.floating
for seed in seeds))
@jtu.skip_on_devices("gpu") # Fails on A100.
def testPolar(
self, n_zero_sv, degeneracy, geometric_spectrum, max_sv, shape, method,
side, nonzero_condition_number, dtype, seed):
""" Tests jax.scipy.linalg.polar."""
if jtu.device_under_test() != "cpu":
if jnp.dtype(dtype).name in ("bfloat16", "float16"):
raise unittest.SkipTest("Skip half precision off CPU.")
if method == "svd":
raise unittest.SkipTest("Can't use SVD mode on TPU/GPU.")
matrix, _ = _initialize_polar_test(self.rng(),
shape, n_zero_sv, degeneracy, geometric_spectrum, max_sv,
nonzero_condition_number, dtype)
if jnp.dtype(dtype).name in ("bfloat16", "float16"):
self.assertRaises(
NotImplementedError, jsp.linalg.polar, matrix, method=method,
side=side)
return
unitary, posdef = jsp.linalg.polar(matrix, method=method, side=side)
if shape[0] >= shape[1]:
should_be_eye = np.matmul(unitary.conj().T, unitary)
else:
should_be_eye = np.matmul(unitary, unitary.conj().T)
tol = 10 * jnp.finfo(matrix.dtype).eps
eye_mat = np.eye(should_be_eye.shape[0], dtype=should_be_eye.dtype)
with self.subTest('Test unitarity.'):
self.assertAllClose(
eye_mat, should_be_eye, atol=tol * min(shape))
with self.subTest('Test Hermiticity.'):
self.assertAllClose(
posdef, posdef.conj().T, atol=tol * jnp.linalg.norm(posdef))
ev, _ = np.linalg.eigh(posdef)
ev = ev[np.abs(ev) > tol * np.linalg.norm(posdef)]
negative_ev = jnp.sum(ev < 0.)
with self.subTest('Test positive definiteness.'):
assert negative_ev == 0.
if side == "right":
recon = jnp.matmul(unitary, posdef, precision=lax.Precision.HIGHEST)
elif side == "left":
recon = jnp.matmul(posdef, unitary, precision=lax.Precision.HIGHEST)
with self.subTest('Test reconstruction.'):
self.assertAllClose(
matrix, recon, atol=tol * jnp.linalg.norm(matrix))
@parameterized.named_parameters(jtu.cases_from_list(
{'testcase_name':
'_linear_size_={}_seed={}_dtype={}'.format(
linear_size, seed, jnp.dtype(dtype).name
),
'linear_size': linear_size, 'seed': seed, 'dtype': dtype}
for linear_size in linear_sizes
for seed in seeds
for dtype in jtu.dtypes.floating))
def test_spectral_dac_eigh(self, linear_size, seed, dtype):
if jtu.device_under_test != "cpu":
raise unittest.SkipTest("Skip eigh off CPU for now.")
if jnp.dtype(dtype).name in ("bfloat16", "float16"):
if jtu.device_under_test() != "cpu":
raise unittest.SkipTest("Skip half precision off CPU.")
rng = self.rng()
H = rng.randn(linear_size, linear_size)
H = jnp.array(0.5 * (H + H.conj().T)).astype(dtype)
if jnp.dtype(dtype).name in ("bfloat16", "float16"):
self.assertRaises(
NotImplementedError, jax._src.scipy.eigh.eigh, H)
return
evs, V = jax._src.scipy.eigh.eigh(H)
ev_exp, eV_exp = jnp.linalg.eigh(H)
HV = jnp.dot(H, V, precision=lax.Precision.HIGHEST)
vV = evs * V
eps = jnp.finfo(H.dtype).eps
atol = jnp.linalg.norm(H) * eps
self.assertAllClose(ev_exp, jnp.sort(evs), atol=20 * atol)
self.assertAllClose(HV, vV, atol=30 * atol)
@parameterized.named_parameters(jtu.cases_from_list(
{'testcase_name':
'_linear_size_={}_seed={}_dtype={}'.format(
linear_size, seed, jnp.dtype(dtype).name
),
'linear_size': linear_size, 'seed': seed, 'dtype': dtype}
for linear_size in linear_sizes
for seed in seeds
for dtype in jtu.dtypes.floating))
@jtu.skip_on_devices("gpu") # Fails on A100.
def test_spectral_dac_svd(self, linear_size, seed, dtype):
if jnp.dtype(dtype).name in ("bfloat16", "float16"):
if jtu.device_under_test() != "cpu":
raise unittest.SkipTest("Skip half precision off CPU.")
rng = self.rng()
A = rng.randn(linear_size, linear_size).astype(dtype)
if jnp.dtype(dtype).name in ("bfloat16", "float16"):
self.assertRaises(
NotImplementedError, jax._src.scipy.eigh.svd, A)
return
S_expected = np.linalg.svd(A, compute_uv=False)
U, S, V = jax._src.scipy.eigh.svd(A)
recon = jnp.dot((U * jnp.expand_dims(S, 0)), V,
precision=lax.Precision.HIGHEST)
eps = jnp.finfo(dtype).eps
eps = eps * jnp.linalg.norm(A) * 15
self.assertAllClose(np.sort(S), np.sort(S_expected), atol=eps)
self.assertAllClose(A, recon, atol=eps)
# U is unitary.
u_unitary_delta = jnp.dot(U.conj().T, U, precision=lax.Precision.HIGHEST)
u_eye = jnp.eye(u_unitary_delta.shape[0], dtype=dtype)
self.assertAllClose(u_unitary_delta, u_eye, atol=eps)
# V is unitary.
v_unitary_delta = jnp.dot(V.conj().T, V, precision=lax.Precision.HIGHEST)
v_eye = jnp.eye(v_unitary_delta.shape[0], dtype=dtype)
self.assertAllClose(v_unitary_delta, v_eye, atol=eps)
@parameterized.named_parameters(jtu.cases_from_list(
{"testcase_name": f"_{jtu.format_shape_dtype_string((n_obs, n_codes, *n_feats), dtype)}",
"n_obs": n_obs, "n_codes": n_codes, "n_feats": n_feats, "dtype": dtype}
for n_obs in [1, 3, 5]
for n_codes in [1, 2, 4]
for n_feats in [()] + [(i,) for i in range(1, 3)]
for dtype in float_dtypes + int_dtypes)) # scipy doesn't support complex
def test_vq(self, n_obs, n_codes, n_feats, dtype):
rng = jtu.rand_default(self.rng())
args_maker = lambda: [rng((n_obs, *n_feats), dtype), rng((n_codes, *n_feats), dtype)]
self._CheckAgainstNumpy(osp_cluster.vq.vq, lsp_cluster.vq.vq, args_maker, check_dtypes=False)
self._CompileAndCheck(lsp_cluster.vq.vq, args_maker)
if __name__ == "__main__":
absltest.main(testLoader=jtu.JaxTestLoader())
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